SRR1780904_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780904_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379896
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	6841	1.8007559963779558	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	6764	1.7804872912586602	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCG	1849	0.4867121527997136	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1144	0.3011350474866806	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	847	0.22295575631225387	No Hit
CATAAACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	648	0.17057299892602187	No Hit
CACTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	537	0.1413544759618422	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCTCGT	30	8.371762E-6	58.330482	37
AGGGGGG	1865	0.0	57.055656	70
GCCGTCA	90	0.0	54.44178	46
CCGTCTT	2085	0.0	52.707256	47
CGTATGC	2250	0.0	52.575207	41
TCCGCGA	20	0.006942582	52.51126	1
CGGGTAG	20	0.0069498154	52.497433	10
CCGGGTA	20	0.0069498154	52.497433	3
TCGTATG	2280	0.0	52.343933	40
TGCCGTC	2215	0.0	51.82591	45
GCCGTCT	2155	0.0	51.807217	46
CGTCTTC	2135	0.0	51.800747	48
TATGCCG	2240	0.0	51.71622	43
CTCGTAT	2240	0.0	51.55998	39
TCTCGTA	2215	0.0	51.35189	38
GTATGCC	2260	0.0	51.258556	42
ATCTCGT	2195	0.0	51.182007	37
ATGCCGT	2245	0.0	51.133358	44
AATCTCG	2250	0.0	50.55308	36
TCTTCTG	2170	0.0	50.488052	50