SRR1780902_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780902_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	177030
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	8717	4.924024176693216	No Hit
CTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	8562	4.836468395187256	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCG	2597	1.4669829972321076	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1704	0.962548720555838	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	990	0.5592272496187087	No Hit
CATAAACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	734	0.4146189911314466	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	689	0.3891995706942326	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	345	0.19488222335197425	No Hit
CAAATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	330	0.18640908320623623	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	320	0.18076032310907755	No Hit
CATATACACATCTCCGCGCCCACGAGACCATTTCGAATCTCGTATGCCGT	191	0.10789131785573067	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACTT	20	7.9134494E-5	69.994064	47
AGGGGGG	2405	0.0	63.736805	70
ATATACA	1355	0.0	61.212524	2
CATATAC	1370	0.0	59.5205	1
TGACGTC	80	0.0	56.87018	45
ATATCGT	80	0.0	56.87018	37
CGAATCA	50	9.749783E-10	55.995255	34
TTCGATC	25	2.3864942E-4	55.995255	32
TGCCGTA	50	9.749783E-10	55.995255	45
CATCTCG	45	2.6879206E-8	54.43983	36
TATGACG	90	0.0	54.43983	43
ATGACGT	90	0.0	54.43983	44
CGAATCT	3090	0.0	54.02455	34
CCGTCTT	2870	0.0	54.01981	47
AATCTCG	3085	0.0	53.998665	36
TCGAATC	3125	0.0	53.97942	33
GCCGTCT	2920	0.0	53.933784	46
TATGCCG	3130	0.0	53.893196	43
CGTCTTC	2875	0.0	53.804134	48
TGCCGTC	3090	0.0	53.798035	45