SRR1780901_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780901_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392269
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	8446	2.153114316961065	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	8126	2.0715376438107524	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCG	2196	0.5598199194940207	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1727	0.4402591079080937	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	1067	0.27200721953557383	No Hit
CATAAACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	726	0.18507707720977187	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	706	0.17997853513787732	No Hit
CATATACACATCTCCGAGCCCACGAGACCTGCCCGAATCTCGTATGCCGT	427	0.10885387323494847	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAATGC	40	1.3460522E-10	70.00892	41
CGACTTC	30	1.0225267E-7	70.0	48
AGGGGGG	2410	0.0	61.729862	70
CGTCTTA	95	0.0	58.947372	48
ATATCGT	90	0.0	58.340775	37
GAGCTAG	25	2.3845761E-4	56.021427	1
GCCGTCA	240	0.0	55.416664	46
AATATCG	90	0.0	54.45139	36
ATATACA	1485	0.0	54.194935	2
TACGTTC	20	0.006941634	52.51339	57
TATGCCG	3155	0.0	52.36133	43
CCGTCTT	2900	0.0	52.25862	47
CGTATGC	3170	0.0	52.00979	41
GTATGCC	3190	0.0	52.00627	42
GCCGTCT	2960	0.0	51.790543	46
CTTGAAA	2970	0.0	51.747204	57
CGTCTTC	2865	0.0	51.67539	48
TCGTATG	3220	0.0	51.637012	40
ATCTCGT	3160	0.0	51.620506	37
ATCGTAT	95	0.0	51.585526	39