SRR1780900_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780900_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397787
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	7604	1.9115757930751887	No Hit
CATATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	7479	1.8801519406114329	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	1931	0.4854356728600985	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1296	0.32580250234421937	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	669	0.16818045838602066	No Hit
CATAAACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	621	0.15611369903993846	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	472	0.11865646690314163	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	50	1.4551915E-11	62.99955	48
ATCGTAT	75	0.0	60.666225	39
ATATCGT	75	0.0	60.666225	37
GCCGACT	60	1.8189894E-12	58.332916	46
TGCCGAC	60	1.8189894E-12	58.332916	45
AGGGGGG	2300	0.0	57.37636	70
CGTCTAC	25	2.3892144E-4	55.9996	48
AACGCCG	25	2.3892144E-4	55.9996	27
CGACGTG	45	2.6977432E-8	54.444057	29
GCCGTCT	2525	0.0	53.22734	46
TATGCCG	2710	0.0	52.693348	43
CCGTCTT	2525	0.0	52.67289	47
TAGACGC	20	0.0069489097	52.499622	5
CGTCTTC	2560	0.0	52.499622	48
CCCGTTC	20	0.0069489097	52.499622	22
TCTCACG	20	0.0069489097	52.499622	8
ACGAAGG	20	0.0069489097	52.499622	2
CGTATGC	2765	0.0	52.151524	41
TCTCGTA	2775	0.0	51.96359	38
GTATGCC	2755	0.0	51.959698	42