SRR1780897_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780897_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	474519
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CATATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	10319	2.1746231447002122	No Hit
CTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	9178	1.9341691270528685	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCG	2579	0.5434977313869412	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1937	0.4082028327632824	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	1145	0.2412969765172733	No Hit
CATAAACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	994	0.20947527917744074	No Hit
CACTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	828	0.17449248607537315	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2820	59.69391	70
CATATAC	1560	53.623253	1
TATGCCG	3520	51.203373	43
CGTATGC	3545	51.050488	41
TCGTATG	3625	50.986065	40
ATGCCGT	3510	50.950428	44
GCCGTCT	3360	50.829353	46
GTATGCC	3540	50.617508	42
CTCGTAT	3625	50.60514	39
TGCCGTC	3520	50.40798	45
CCGTCTT	3325	50.317154	47
CGTCTTC	3355	50.180195	48
TCTCGTA	3670	50.175423	38
ATATACA	1705	49.67876	2
ATCTCGT	3695	49.456963	37
TATCTCG	3695	49.456963	36
CTGCTTG	3440	48.538406	54
GATATCT	3825	48.04052	34
AGATATC	3915	47.56195	33
ATATCTC	3835	47.560204	35