SRR1780894_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780894_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	301071
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	15581	5.175191233961424	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCG	2842	0.9439633840522668	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	1322	0.4390990829405688	No Hit
ATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGTCTT	539	0.17902753835474025	TruSeq Adapter, Index 1 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	461	0.15312002816611364	No Hit
CTTATACACATCTCCGCGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	328	0.10894440181884009	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	319	0.10595507372015238	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTAC	25	2.835899E-6	70.0	48
CCCGTGT	15	0.0022233052	70.0	59
GACGACT	15	0.0022233052	70.0	46
AGGGGGG	2015	0.0	60.099255	70
ACCGCGA	25	2.3881937E-4	55.999996	31
CGACACT	25	2.3881937E-4	55.999996	23
TGTCCGA	45	2.6946509E-8	54.444443	29
CCGTGTG	20	0.0069470797	52.5	60
CGTCTTA	40	7.465751E-7	52.5	48
CGCGAAC	60	8.367351E-11	52.5	33
CGGATTT	20	0.0069470797	52.5	34
TTGCGTT	20	0.0069470797	52.5	18
GCGGACC	20	0.0069470797	52.5	44
GTCTTCA	120	0.0	52.5	49
CGTCTTC	2730	0.0	51.794872	48
GCCGTCT	2730	0.0	51.794872	46
CCGTCTT	2730	0.0	51.282055	47
TATGCCG	2800	0.0	51.25	43
TCTCGTA	2830	0.0	50.830387	38
GATCTCG	2810	0.0	50.81851	36