SRR1780893_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780893_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	45988
Sequences flagged as poor quality	0
Sequence length	76
%GC	84

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26786	58.24562929459859	No Hit
CTTATACACATCTGACGCTGCCGACGACTCCTTACGTGTAGATCTCGGTG	169	0.3674871705662347	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	73	0.15873706184221972	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	71	0.15438810124380273	No Hit
GGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	55	0.1195964164564669	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	54	0.11742193615725842	No Hit
GGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	50	0.10872401496042446	No Hit
GGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	48	0.10437505436200747	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACATA	15	0.0022112993	70.0	67
CATTAGA	15	0.0022112993	70.0	55
CCATTAG	20	7.8480225E-5	70.0	54
TCCATTA	15	0.0022112993	70.0	53
ATCATAA	15	0.0022112993	70.0	59
TGTGGGC	20	7.8480225E-5	70.0	3
CTATGGT	15	0.0022112993	70.0	27
TTTATGC	15	0.0022112993	70.0	7
GTCGGGC	15	0.0022112993	70.0	10
TCGGGCG	15	0.0022112993	70.0	11
GGTGTCG	20	0.0069098515	52.5	41
CATAAAA	20	0.0069098515	52.5	61
TGTAGAT	85	1.8189894E-12	45.294117	37
GTGTAGA	90	1.8189894E-12	42.777775	36
CGTGTAG	90	1.8189894E-12	42.777775	35
GTCGCCG	85	5.4569682E-11	41.17647	51
TTACGTG	85	5.4569682E-11	41.17647	32
TACGTGT	95	3.6379788E-12	40.526314	33
CCGTATC	70	1.8600986E-8	40.000004	55
GCCGTAT	70	1.8600986E-8	40.000004	54