SRR1780892_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780892_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	314013
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	20170	6.423300946139173	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCG	3330	1.060465649511326	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	1854	0.5904214156738734	No Hit
ATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGTCTT	629	0.20031017824102826	Illumina PCR Primer Index 4 (95% over 22bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	507	0.1614582835742469	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	500	0.1592290765032021	No Hit
CTTATACACATCTCCGCGCCCACGAGACTTCTACCAATCTCGTATGCCGT	476	0.1515860808310484	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATATCGTATGCCGT	377	0.12005872368341439	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2470	0.0	59.23616	70
GACGTCC	30	8.369358E-6	58.329353	42
CCGACTT	55	3.6379788E-11	57.26882	47
AAAACGG	25	2.3872787E-4	56.005096	67
AACGGGG	25	2.3872787E-4	56.005096	69
CGTATGA	95	0.0	55.259388	41
ACGTATG	65	3.6379788E-12	53.842476	40
GACAACG	20	0.0069448547	52.50478	63
TGACGTC	80	0.0	52.496418	45
ATATCGT	160	0.0	52.496418	37
GCCGACT	60	8.367351E-11	52.496418	46
TGCCGAC	80	0.0	52.496418	45
CAGCTTG	125	0.0	50.404587	54
ATCGTAT	160	0.0	50.30907	39
GACTTAT	35	2.0828564E-5	50.004547	26
AAACTCG	70	7.2759576E-12	49.996586	36
ACGTCCG	35	2.08482E-5	49.996586	43
CGTCATC	140	0.0	49.996586	48
GCCGTCA	140	0.0	49.996586	46
TATGCCG	3400	0.0	49.82013	43