SRR1780891_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780891_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	451296
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	19532	4.327979862440615	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCG	3291	0.7292331418847054	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	1375	0.3046780826774445	No Hit
ATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGTCTT	547	0.12120648089059066	RNA PCR Primer, Index 15 (95% over 22bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	508	0.11256470254555768	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	489	0.10835460540310574	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTGCGT	15	0.002224445	69.99667	27
TCGTTAG	15	0.002224445	69.99667	17
AACTCGT	30	1.0232179E-7	69.99667	37
AGGGGGG	2485	0.0	60.848923	70
TGACGTC	70	0.0	59.99715	45
GCCGACT	55	3.6379788E-11	57.270004	46
TGCCGAC	80	0.0	56.872295	45
AAGCCGT	50	9.804353E-10	55.997345	44
CGTATGA	65	3.6379788E-12	53.843594	41
AAACTCG	40	7.476592E-7	52.497505	36
CGTTAGC	20	0.0069506206	52.497505	18
TACCGTG	20	0.0069506206	52.497505	7
TATGCCG	3430	0.0	52.344456	43
ATCTCGT	3380	0.0	52.290417	37
TCGTATG	3525	0.0	52.22447	40
CGTATGC	3500	0.0	52.19752	41
CTCGTAT	3385	0.0	52.006397	39
TCTCGTA	3400	0.0	51.98283	38
AATCTCG	3405	0.0	51.90649	36
CGTCTTC	3355	0.0	51.74694	48