SRR1780888_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780888_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	215559
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	15856	7.355758748184951	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	2742	1.2720415292332956	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	1313	0.6091139780756081	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	521	0.2416971687565817	RNA PCR Primer, Index 16 (95% over 23bp)
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	429	0.19901743838113928	No Hit
CTTATACACATCTCCGAGCCCACGAGCCCGCCGTGCATCTCGTATGCCGT	374	0.17350238217842912	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	363	0.16839937093788707	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	335	0.15540988778014372	No Hit
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGACGT	217	0.10066849447251101	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCCGTC	70	0.0	64.99461	45
AGGGGGG	1885	0.0	62.953682	70
GCCGTGA	45	3.8380676E-10	62.21707	30
CGTGAAT	40	1.0624717E-8	61.244926	32
CACGTAT	40	1.0624717E-8	61.244926	39
TGCCGTA	40	1.0624717E-8	61.244926	45
CCGACTT	70	0.0	59.99503	47
CTCGTAA	90	0.0	58.328503	39
CGAATGC	60	1.8189894E-12	58.3285	41
AAGCCGT	80	0.0	56.87029	44
CGTCTAC	50	9.767973E-10	55.99536	48
GCCGTAT	25	2.387643E-4	55.99536	46
GTCTTCA	125	0.0	55.995358	49
ATCGTAT	45	2.6915586E-8	54.439938	39
CAACTCG	45	2.6915586E-8	54.439938	36
GCCGACT	80	0.0	52.49565	46
AACTCGT	40	7.460021E-7	52.49565	37
CGACTTA	20	0.006946691	52.49565	48
GTGGTAC	20	0.006946691	52.49565	3
GCCGTCA	200	0.0	52.49565	46