SRR1780886_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780886_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	339747
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	21190	6.236993998475336	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	3561	1.0481328753454775	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	2087	0.6142806264661645	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	708	0.20839036106279082	RNA PCR Primer, Index 15 (95% over 23bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	564	0.16600588084662998	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	536	0.15776445413793205	No Hit
CTTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	434	0.1277421139848181	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	40	1.0631993E-8	61.257473	37
TAACTCG	40	1.0631993E-8	61.257473	36
AGGGGGG	2415	0.0	59.717434	70
GATACAA	20	0.006932366	52.52961	1
TTAATAC	20	0.006936406	52.521873	3
CGTATGC	3385	0.0	52.118618	41
CGTCTTC	3230	0.0	52.11176	48
CCGTCTT	3210	0.0	52.109394	47
GCCGTCT	3260	0.0	52.061573	46
CTTGAAA	3295	0.0	51.95632	57
TATGCCG	3345	0.0	51.88941	43
TCGTATG	3470	0.0	51.850704	40
CTCGTAT	3415	0.0	51.660767	39
GTATGCC	3375	0.0	51.531857	42
TCTCGTA	3440	0.0	51.48884	38
TCTTCTG	3290	0.0	51.480484	50
CTGCTTG	3260	0.0	51.332832	54
TGCCGTC	3355	0.0	51.213226	45
ATCTCGT	3425	0.0	51.203327	37
ATGCCGT	3365	0.0	51.165028	44