SRR1780885_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780885_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	362174
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	18925	5.225388901467251	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCG	3188	0.8802398846963062	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	1324	0.365570140319294	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	558	0.15406959085964206	No Hit
ATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGTCTT	532	0.1468907210346408	RNA PCR Primer, Index 31 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACACCGAGATATCTCGTATGCCGT	464	0.12811521533848372	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	429	0.11845135211252049	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2415	0.0	59.57309	70
CGACTTC	30	8.368848E-6	58.33299	48
AATGGTC	20	0.006948374	52.49969	43
GCGTCTA	20	0.006948374	52.49969	3
TAATCCG	20	0.006948374	52.49969	52
AGCCGTC	60	8.367351E-11	52.499687	45
CCGTCTT	3160	0.0	51.392097	47
CGTCTTC	3190	0.0	51.347664	48
AACCCGA	75	0.0	51.33303	27
GCCGTCT	3230	0.0	51.145206	46
TATGCCG	3385	0.0	50.76779	43
TCGTATG	3540	0.0	50.5223	40
CGTATGC	3435	0.0	50.43638	41
TCTTCTG	3090	0.0	50.404232	50
ATCTCGT	3575	0.0	50.32138	37
GTCTTCT	3115	0.0	50.22442	49
TGCCGTC	3390	0.0	50.176693	45
CTCGTAT	3530	0.0	50.169678	39
TCTCGTA	3570	0.0	50.09774	38
GTATGCC	3460	0.0	49.869648	42