SRR1780879_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780879_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	285211
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	19347	6.783398957263219	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCG	2446	0.8576106812149601	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2119	0.7429587217884304	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	2026	0.7103512837863898	No Hit
ATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGTCTT	572	0.20055327459319588	RNA PCR Primer, Index 15 (95% over 22bp)
CTTATACACATCTCCGCGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	486	0.1704001598816315	No Hit
CATATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	451	0.15812854342925062	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	359	0.1258717230401352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACTCGT	35	3.6943675E-9	70.01596	37
CGTCTAC	25	2.8346276E-6	70.003685	48
CGTAGAA	15	0.0022242672	69.99141	42
AGGGGGG	2770	0.0	62.295696	70
AAACTCG	40	1.0613803E-8	61.263966	36
AAGGGGG	3235	0.0	53.007404	69
CCGTCTT	3285	0.0	52.946316	47
CGTCTTC	3280	0.0	52.929615	48
TATGCCG	3355	0.0	52.884716	43
GCCGTCT	3335	0.0	52.677193	46
TCGTATG	3405	0.0	52.640488	40
CGTATGA	60	8.367351E-11	52.51197	41
TGACGTA	20	0.0069404417	52.51197	39
ATCGTAT	80	0.0	52.51197	39
ATATCGT	80	0.0	52.51197	37
TACCCGC	20	0.006945258	52.50276	11
CGTTACC	20	0.006945258	52.50276	14
CTACCCG	20	0.006950077	52.493557	10
CGTATGC	3400	0.0	52.409004	41
CTCGTAT	3360	0.0	52.30359	39