SRR1780878_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780878_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	180077
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	20157	11.19354498353482	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCG	3130	1.738145348934067	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2481	1.3777439650816041	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	1846	1.0251170332691015	No Hit
ATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGTCTT	621	0.34485247977254174	TruSeq Adapter, Index 8 (95% over 21bp)
CTTATACACATCTCCGCGCCCACGAGACCATTTCGAATCTCGTATGCCGT	447	0.24822714727588754	No Hit
CATATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	394	0.2187952931246078	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	376	0.20879956907322977	No Hit
CTAATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	271	0.15049117877352466	No Hit
CTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGTC	199	0.11050828256801257	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTATC	15	0.0022219548	69.99916	28
GCTTCGT	15	0.0022219548	69.99916	32
AGGGGGG	2340	0.0	62.687603	70
ACTCTCG	25	2.3857466E-4	55.999332	36
CGTATGA	85	0.0	53.528774	41
CTCGTAT	3210	0.0	53.42616	39
TCGTATG	3240	0.0	53.363564	40
AATCTCG	3235	0.0	53.337852	36
CGAATCT	3270	0.0	53.195087	34
TCTCGTA	3265	0.0	53.16935	38
ATCTCGT	3250	0.0	53.091675	37
GAATCTC	3265	0.0	53.062153	35
CGTATGC	3195	0.0	53.01971	41
TCGAATC	3315	0.0	52.895298	33
ATGCCGT	3150	0.0	52.88826	44
TGCCGTC	3150	0.0	52.777153	45
TATGCCG	3165	0.0	52.748188	43
CCGTCTT	3040	0.0	52.729633	47
CTTGAAA	3100	0.0	52.725178	57
GTATGCC	3180	0.0	52.7195	42