SRR1780877_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780877_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317148
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	19449	6.13246812213856	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCG	2552	0.8046716359554529	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	2316	0.7302584282417042	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2287	0.7211144323785741	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGCCCGAATCTCGTATGCCGT	1227	0.3868856180710583	No Hit
ATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGTCTT	547	0.17247468059076518	RNA PCR Primer, Index 40 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	411	0.12959249309470658	No Hit
CTTATACACATCTCCGCGCCCACGAGACCTGACCGAATCTCGTATGCCGT	390	0.12297097884899164	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	364	0.1147729135923922	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGGTGT	15	0.0022234349	69.99984	9
AGGGGGG	2570	0.0	62.3734	70
CCGACTT	35	2.9691E-7	59.999866	47
AACTCGT	30	8.366276E-6	58.3332	37
GACCGAT	25	2.3884152E-4	55.999874	31
CGTCTAC	25	2.3884152E-4	55.999874	48
CTTGAAA	3180	0.0	53.38038	57
CCGTCTT	3105	0.0	53.317112	47
GCCGTCT	3150	0.0	53.110992	46
CGTCTTC	3085	0.0	53.095505	48
CTCGTAT	3475	0.0	52.9783	39
TATGCCG	3415	0.0	52.884212	43
TCGTATG	3520	0.0	52.79818	40
TGCCGTC	3355	0.0	52.78677	45
CGTATGC	3470	0.0	52.752045	41
TCTCGTA	3510	0.0	52.649452	38
TCTTCTG	3010	0.0	52.55802	50
ATGCCGT	3405	0.0	52.525578	44
GAGTCGT	20	0.00694748	52.49988	13
GCCGACT	40	7.4671334E-7	52.49988	46