SRR1780876_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780876_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	305419
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

$Per sequence GC content graph$

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	24776	8.112134477553786	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	3070	1.005176495240964	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	2187	0.7160654707140027	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1931	0.6322461929349517	No Hit
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	653	0.21380464214734515	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	613	0.2007078799943684	RNA PCR Primer, Index 16 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	555	0.18171757487255213	No Hit
CTTATACACATCTCCGAGCCCACGAGCCCGCCGTGCATCTCGTATGCCGT	472	0.15454179340512542	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	369	0.12081763086121033	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATGG	15	0.0022230882	70.00196	39
GCATCGC	15	0.0022230882	70.00196	35
AGGGGGG	3275	0.0	62.10351	70
ACCGACG	40	1.0633812E-8	61.25172	27
ATCGTAT	60	1.8189894E-12	58.33497	39
ATATCGT	60	1.8189894E-12	58.33497	37
CTCGAAA	25	2.3879168E-4	56.001575	39
TGCCGTA	75	0.0	55.9924	45
GACCGAC	45	2.6942871E-8	54.445976	26
CGTCTTA	65	3.6379788E-12	53.838852	48
CGTATGC	4165	0.0	53.783024	41
CCGTCTT	3920	0.0	53.74271	47
ATCTCGT	4110	0.0	53.651142	37
TCGTATG	4180	0.0	53.59002	40
CATCTCG	4150	0.0	53.555717	36
TATGCCG	4170	0.0	53.541897	43
GCCGTCT	3955	0.0	53.532562	46
CGTCTTC	3915	0.0	53.453793	48
CAGCTTG	190	0.0	53.42255	54
ATGCCGT	4170	0.0	53.374054	44