SRR1780874_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780874_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311632
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	20394	6.5442573291574675	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	3029	0.9719797710119629	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2727	0.8750705960876931	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	2314	0.742542486009139	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	716	0.2297581763105201	RNA PCR Primer, Index 15 (95% over 23bp)
CATATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	439	0.14087128407865687	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	391	0.12546850130923654	No Hit
CTTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	385	0.123543153463059	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTTGCA	15	0.0022246928	69.98957	19
CGTCTTA	20	7.9254096E-5	69.98957	48
GACTTGC	15	0.0022246928	69.98957	18
AGGGGGG	2610	0.0	60.07732	70
GCAGCGT	25	2.3787317E-4	56.045612	1
ACGAGTA	25	2.3862942E-4	56.009632	5
GAGATCC	25	2.3862942E-4	56.009632	38
CGTATGA	90	0.0	54.453808	41
TCCGGTC	20	0.006946989	52.500607	8
TGAACGT	20	0.0069514	52.49218	25
GAACGTA	20	0.0069514	52.49218	26
GCCGTCT	3220	0.0	50.87015	46
CGTCTTC	3235	0.0	50.8425	48
CCGTCTT	3190	0.0	50.799953	47
TCGTATG	3380	0.0	50.23053	40
TCTTCTG	3215	0.0	50.179146	50
TATGCCG	3265	0.0	50.06183	43
AGCGTCA	35	2.0818221E-5	50.008595	3
CGTATGC	3305	0.0	49.993465	41
CTCGTAT	3365	0.0	49.93429	39