SRR1780873_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780873_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395353
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	21318	5.392143223903701	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCG	3281	0.8298912617331853	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2550	0.6449932086009212	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	1961	0.4960124243397672	No Hit
ATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGTCTT	568	0.1436690754844405	RNA PCR Primer, Index 31 (95% over 21bp)
CATATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	518	0.1310221498255989	No Hit
CTTATACACATCTCCGAGCCCACGAGACACCGAGATATCTCGTATGCCGT	398	0.10066952824437908	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCGTAT	15	0.0022228495	70.00771	39
TGACGTC	55	0.0	63.64338	45
AGGGGGG	2605	0.0	62.60935	70
TGCCGTA	50	9.786163E-10	56.006172	45
GTGTGCG	25	2.3907982E-4	55.99201	43
GCCGTAT	45	2.6951966E-8	54.450443	46
CGTATGA	60	8.367351E-11	52.492508	41
GCACGTC	20	0.0069526047	52.492504	25
GTAGCGC	20	0.0069526047	52.492504	57
TCGGACG	20	0.0069526047	52.492504	10
TCGCTCG	20	0.0069526047	52.492504	4
TTGCGCA	20	0.0069526047	52.492504	28
ATGCGAT	20	0.0069526047	52.492504	55
ACGTAAT	20	0.0069526047	52.492504	43
GTCGGAC	20	0.0069526047	52.492504	9
GCCGTCA	115	0.0	51.744835	46
CTTGAAA	3480	0.0	51.688026	57
TCGTATG	3625	0.0	51.647797	40
TCTCGTA	3650	0.0	51.402924	38
CTCGTAT	3630	0.0	51.39685	39