SRR1780870_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780870_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	253601
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	12857	5.0697749614552	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCG	2324	0.9164001719236123	No Hit
ATTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	1804	0.7113536618546457	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1801	0.7101707012196324	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	923	0.3639575553724157	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	461	0.1817816175803723	No Hit
ATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGTCTT	402	0.15851672509177803	TruSeq Adapter, Index 1 (95% over 21bp)
CTTATACACATCTCCGCGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	276	0.10883237842122073	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	267	0.10528349651618094	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2020	0.0	59.42383	70
CGAACTC	55	3.6379788E-11	57.2774	35
AATCGGC	25	2.3888359E-4	55.99353	23
AACTCGT	45	2.6906491E-8	54.44889	37
CGTATGA	45	2.6948328E-8	54.438156	41
CCGCGAA	65	3.6379788E-12	53.839935	32
TCCATTC	20	0.0069435765	52.50429	19
TTGTACG	20	0.0069435765	52.50429	9
GCCGTCA	80	0.0	52.50429	46
TATGCCG	2430	0.0	51.2698	43
TCTCGTA	2390	0.0	51.25942	38
ATCTCGT	2350	0.0	51.23823	37
CTTGAAA	2400	0.0	51.181587	57
GCCGTCT	2415	0.0	51.1636	46
TCGTATG	2500	0.0	51.094097	40
CGTATGC	2480	0.0	51.08281	41
CTCGTAT	2440	0.0	51.069744	39
TGACGTC	55	2.2737368E-9	50.913246	45
CGTCTTC	2420	0.0	50.768612	48
CTGCTTG	2310	0.0	50.751713	54