SRR1780867_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780867_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214017
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	13579	6.344823074802469	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2335	1.0910348243363845	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCG	2335	1.0910348243363845	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	1862	0.8700243438605345	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	1527	0.7134947223818668	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	573	0.2677357406187359	No Hit
ATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGTCTT	488	0.2280192694972829	RNA PCR Primer, Index 15 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	327	0.1527916006672367	No Hit
CTTATACACATCTCCGCGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	268	0.12522369718293405	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	20	7.9022575E-5	70.020805	48
ACGATTG	25	2.8320246E-6	70.00444	27
AGGGGGG	2120	0.0	63.58021	70
AACTCGT	35	2.967954E-7	59.989784	37
ATCGTAT	80	0.0	56.86532	39
TTCGGCA	40	7.4522177E-7	52.50333	25
TGCCGAC	40	7.4522177E-7	52.50333	45
AAACTCG	40	7.4642594E-7	52.491066	36
AGCGTCA	20	0.0069490233	52.491066	3
GCCGTCT	2705	0.0	52.018085	46
CGTCTTC	2710	0.0	51.93425	48
CCGTCTT	2690	0.0	51.91779	47
TCGTATG	2815	0.0	51.83842	40
CGTATGC	2775	0.0	51.70291	41
TATGCCG	2740	0.0	51.597057	43
ATATCGT	95	0.0	51.570168	37
TGCCGTC	2730	0.0	51.413517	45
ATCTCGT	2740	0.0	51.341625	37
CTCGTAT	2755	0.0	51.316128	39
AATCTCG	2765	0.0	51.257095	36