SRR1780866_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780866_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	191072
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	15892	8.317283537095964	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2646	1.384818288393904	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCG	2602	1.361790319879417	No Hit
ATTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	1826	0.9556606933511975	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	1444	0.7557360576117903	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	661	0.3459428906380841	No Hit
ATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGTCTT	521	0.2726720817283537	TruSeq Adapter, Index 8 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	435	0.22766287054094791	No Hit
CTTATACACATCTCCGCGCCCACGAGACCATTTCGAATCTCGTATGCCGT	290	0.1517752470272986	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACCA	15	0.0022235417	69.98822	31
ACTCTCG	20	7.918329E-5	69.98822	36
CGATTTG	15	0.0022235417	69.98822	32
GGGACCG	15	0.0022235417	69.98822	5
AGGGGGG	2240	0.0	62.365906	70
AAACTCG	40	1.0622898E-8	61.239697	36
ATATCGA	35	2.9662078E-7	59.989906	30
TGCCGAC	35	2.9662078E-7	59.989906	45
CGTCTAC	30	8.348854E-6	58.338787	48
AGCCGTC	30	8.361823E-6	58.323517	45
CCGACTT	30	8.361823E-6	58.323517	47
CGACTCT	30	8.361823E-6	58.323517	34
CTCTCGT	30	8.361823E-6	58.323517	37
GCCGTAT	30	8.361823E-6	58.323517	46
ATCGTAT	55	3.6379788E-11	57.26309	39
ATATCGT	55	3.6379788E-11	57.26309	37
ACCTGCG	25	2.3879607E-4	55.99058	7
AATATCG	50	9.767973E-10	55.99058	36
AAGCCGT	25	2.3879607E-4	55.99058	44
AACTCGT	45	2.6911948E-8	54.435287	37