SRR1780865_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780865_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	315877
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	14601	4.6223688334383315	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2428	0.7686536215045731	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCG	2342	0.7414278342519398	No Hit
ATTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	1751	0.5543296916204725	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	1681	0.5321691671125153	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGCCCGAATCTCGTATGCCGT	847	0.2681423465462822	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	578	0.18298261665141813	No Hit
ATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGTCTT	521	0.1649376181235101	RNA PCR Primer, Index 40 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	359	0.11365183283366627	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGAATC	60	0.0	64.156944	33
CGAAACT	50	1.4551915E-11	62.990456	34
AGGGGGG	2610	0.0	60.35479	70
CGAATGC	70	0.0	60.000404	41
TCGGATA	25	2.3882934E-4	56.00038	37
AACTCGT	50	9.786163E-10	56.00038	37
GACGACT	25	2.3882934E-4	56.00038	46
AAACTCG	70	0.0	55.000374	36
TGACGTC	110	0.0	54.091278	45
TGCCCGA	195	0.0	53.846516	30
GAAACTC	65	3.6379788E-12	53.837997	35
GCTTTAC	20	0.0069385082	52.516987	1
AAGCCGT	100	0.0	52.50036	44
CATCTCG	60	8.367351E-11	52.500355	36
CACCCGT	20	0.006951557	52.492046	24
CGTCTTC	2985	0.0	51.591644	48
AATCTCG	3375	0.0	51.229977	36
CCGTCTT	2995	0.0	51.185654	47
ATCTCGT	3370	0.0	51.09827	37
CTCGTAT	3360	0.0	51.042015	39