SRR1780864_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780864_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	266075
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	15500	5.8254251620783615	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	2466	0.926806351592596	No Hit
ATTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	2356	0.8854646246359109	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2181	0.819693695386639	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	1069	0.40176641924269474	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	602	0.22625199661749507	No Hit
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	388	0.14582354599267125	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	359	0.13492436343136333	RNA PCR Primer, Index 16 (95% over 23bp)
TCTTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	284	0.10673682232453256	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGT	15	0.002221481	70.012215	9
TAGCGTT	15	0.002221481	70.012215	10
TGACGTA	15	0.0022231382	69.99906	45
AGGCCGT	15	0.0022231382	69.99906	68
CGGTCTA	15	0.0022231382	69.99906	37
CGTTTAG	15	0.0022231382	69.99906	13
GCCGTAA	20	7.917963E-5	69.99906	46
AGGGGGG	2430	0.0	62.797512	70
GATCCTA	25	2.3878449E-4	55.999245	1
AGACGTG	25	2.3878449E-4	55.999245	29
CGTAAGA	25	2.3878449E-4	55.999245	41
TAAGACG	25	2.3878449E-4	55.999245	43
CGTAATC	25	2.3900642E-4	55.98872	48
CATCTCG	3135	0.0	53.02959	36
ATCTCGT	3160	0.0	52.720806	37
GCCGTCT	2910	0.0	52.679707	46
CCGTCTT	2885	0.0	52.65094	47
TCGTATG	3215	0.0	52.58094	40
CGTCTTC	2910	0.0	52.549557	48
CAGACGT	20	0.006946562	52.4993	28