SRR1780863_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780863_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	333282
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	14027	4.2087481472146715	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCG	2502	0.7507156102039715	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2486	0.7459148708901171	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	1756	0.5268811396955131	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCC	1428	0.42846598376149925	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	557	0.167125737363554	No Hit
ATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGTCTT	476	0.14282199458716643	RNA PCR Primer, Index 45 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGATAC	15	0.0022242325	69.9943	3
AGGGGGG	2050	0.0	61.82768	70
ATCGTAA	20	0.0069458424	52.5036	39
TCGTATG	2760	0.0	50.981762	40
TATGCCG	2660	0.0	50.91691	43
CGTATGC	2740	0.0	50.715157	41
CCGTCTT	2570	0.0	50.657356	47
CGTCTTC	2630	0.0	50.566223	48
CTCGTAT	2730	0.0	50.51629	39
ATGCCGT	2670	0.0	50.332977	44
CTGCTTG	2610	0.0	50.30591	54
TCTCGTA	2760	0.0	50.213303	38
GCCGTCT	2635	0.0	50.20464	46
TGCCGTC	2670	0.0	50.201904	45
ATCTCGT	2750	0.0	50.014107	37
GTATGCC	2735	0.0	49.648605	42
CTTCTGC	2715	0.0	49.513588	51
GTCTTCT	2690	0.0	49.43835	49
TCTTCTG	2700	0.0	49.255245	50
CTTGAAA	2780	0.0	49.237385	57