SRR1780862_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780862_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	387025
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	15033	3.884245203798204	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	2737	0.7071894580453459	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2697	0.6968542083844713	No Hit
ATTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	1624	0.4196111362315096	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	1624	0.4196111362315096	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	734	0.1896518312770493	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	433	0.11187907757896777	RNA PCR Primer, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGGGT	15	0.0022234605	70.00259	4
TTAGACC	15	0.0022246004	69.99354	49
GCCGTAT	15	0.0022246004	69.99354	46
AGGGGGG	2395	0.0	60.487644	70
CGAATGC	55	3.6379788E-11	57.26744	41
CGTCTTC	2860	0.0	54.697746	48
TCGTATG	2980	0.0	54.49162	40
CGTATGC	2935	0.0	54.373177	41
TATGCCG	2875	0.0	54.283627	43
GCCGTCT	2870	0.0	54.141342	46
ATGCCGT	2920	0.0	54.05323	44
CCGTCTT	2850	0.0	54.030098	47
CTCGTAT	2980	0.0	53.91139	39
TCTCGTA	2980	0.0	53.91139	38
ATCTCGT	2985	0.0	53.821083	37
GTATGCC	2905	0.0	53.723038	42
TGCCGTC	2940	0.0	53.447445	45
GTCTTCT	2985	0.0	53.22792	49
TCTTCTG	3010	0.0	52.785824	50
CTTCTGC	2985	0.0	52.538044	51