SRR1780861_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780861_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	410531
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	13491	3.2862317340225218	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCG	2539	0.6184673021038607	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2333	0.5682883874786557	No Hit
ATTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	1905	0.46403316680104545	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	1389	0.33834229327383314	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	590	0.14371630887801407	No Hit
ATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGTCTT	430	0.10474239460601027	RNA PCR Primer, Index 31 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATATCGT	15	0.0022222868	70.012665	37
AGGGGGG	2265	0.0	57.62734	70
TAACTCG	40	7.4631316E-7	52.509506	36
AGCCGTC	40	7.475701E-7	52.49671	45
TACGCTC	20	0.0069505908	52.49671	41
ATACGAT	20	0.0069505908	52.49671	24
AATACGA	20	0.0069505908	52.49671	23
CCGTCTT	2490	0.0	51.72997	47
GCCGTCT	2550	0.0	51.610897	46
CGTCTTC	2510	0.0	51.59668	48
TATGCCG	2660	0.0	51.569435	43
CGTATGC	2695	0.0	51.295486	41
TCGTATG	2775	0.0	51.204	40
TCTCGTA	2805	0.0	50.918304	38
ATGCCGT	2665	0.0	50.82233	44
CTCGTAT	2785	0.0	50.78118	39
ATCTCGT	2820	0.0	50.7716	37
GTATGCC	2710	0.0	50.61797	42
TGCCGTC	2695	0.0	50.126728	45
GTCTTCT	2565	0.0	50.080936	49