SRR1780860_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780860_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382699
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	15110	3.94827266337252	RNA PCR Primer, Index 14 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCG	2723	0.7115252456891709	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2575	0.6728525551412468	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCC	1814	0.47400176117523174	RNA PCR Primer, Index 14 (95% over 21bp)
ATTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	1687	0.44081641185370224	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	647	0.16906237016558706	RNA PCR Primer, Index 14 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGTCTT	483	0.1262088482070766	RNA PCR Primer, Index 14 (96% over 26bp)

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACTCG	35	2.972265E-7	59.995407	36
AGGGGGG	2315	0.0	59.730267	70
CCGACTT	25	2.3914617E-4	55.9884	47
GTCGGAC	20	0.0069470224	52.502842	11
CGTCTTA	75	0.0	51.329403	48
ATCTCGT	3015	0.0	50.841877	37
GCCGTCT	2830	0.0	50.81986	46
CCGTCTT	2810	0.0	50.807976	47
TATGCCG	2935	0.0	50.790157	43
CGTCTTC	2815	0.0	50.600033	48
CATCTCG	3065	0.0	50.240852	36
CTCGTAT	3010	0.0	50.228714	39
CGTATGC	2990	0.0	50.213547	41
GTATGCC	2970	0.0	50.191616	42
TCTCGTA	3055	0.0	50.06163	38
TGCCGTC	2985	0.0	50.056625	45
CTTGAAA	2890	0.0	50.020008	57
GTCTTCT	2775	0.0	49.94212	49
TCGTATG	3075	0.0	49.84984	40
TCTTCTG	2790	0.0	49.812073	50