SRR1780858_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780858_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	166486
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	16124	9.68489842989801	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCG	2114	1.2697764376584217	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	1414	0.8493206635993418	No Hit
CTAATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	658	0.3952284276155352	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	600	0.36039066347921145	No Hit
CATATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	563	0.3381665725646601	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	377	0.22644546688610456	No Hit
ATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCCGTCTT	367	0.22043895582811768	TruSeq Adapter, Index 1 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACTGTCCGCGATCTCGTATGCC	248	0.14896147423807407	No Hit
CTTATACACATCTCCGAGCCCACGAGACTGTCAGCGATCTCGTATGCCGT	245	0.14715952092067802	No Hit
CTTATACACATCTCCGCGCCCACGAGACTGTCCGCGATCTCGTATGCCGT	210	0.126136732217724	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTGGTA	15	0.0022204188	70.00901	15
CAGTCCG	35	3.6834535E-9	70.00901	28
TAGCGTG	15	0.0022230672	69.98798	12
CCGCGAA	35	3.6925485E-9	69.98798	32
CGTCTTA	55	0.0	63.644558	48
TGCCGAC	50	1.4551915E-11	62.98919	45
AGGGGGG	2265	0.0	62.89993	70
AGTCCGC	45	3.8198777E-10	62.21154	29
CGCGAAC	40	1.0586518E-8	61.25789	33
CCGACTT	45	2.6820999E-8	54.451458	47
AAGCCGT	45	2.6884663E-8	54.435097	44
GCCGACT	45	2.6884663E-8	54.435097	46
ATCTCGA	65	3.6379788E-12	53.85309	37
CGTATGA	65	3.6379788E-12	53.83691	41
ATCGTAT	85	0.0	53.53631	39
ATATCGT	85	0.0	53.53631	37
TCTTCGT	20	0.006938111	52.50676	20
CGTTGAT	20	0.006938111	52.50676	16
AAGACGA	20	0.006938111	52.50676	52
GCGTTGA	20	0.006938111	52.50676	15