SRR1780857_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780857_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	458274
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	18127	3.955493874843434	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCC	2293	0.5003556824083408	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCG	2213	0.48289887709099794	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	723	0.15776587805548645	No Hit
CTAATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	704	0.15361988679261754	No Hit
CATATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	648	0.1414001230704775	No Hit
ATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGTCTT	467	0.10190410103998918	Illumina PCR Primer Index 1 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTACAT	15	0.0022229482	70.00873	1
AGCGTTG	15	0.0022239105	70.00109	9
AACTCGT	20	7.922925E-5	70.00109	37
AGGGGGG	2735	0.0	61.049664	70
CGAATGC	70	0.0	59.994385	41
GATCTTA	30	8.365896E-6	58.34061	1
CGTATGA	145	0.0	57.925617	41
TGACGTC	110	0.0	57.27362	45
AAGCCGT	45	2.6984708E-8	54.445293	44
AGTGACG	65	3.6379788E-12	53.84112	30
TCTTCTG	3605	0.0	52.72502	50
GATCTCG	3545	0.0	52.62423	36
ATCTCGT	3500	0.0	52.600822	37
CGTCTTC	3635	0.0	52.57877	48
CGATCTC	3515	0.0	52.5755	35
TGCCGAC	20	0.006948954	52.500816	45
GCCGTCT	3570	0.0	52.45752	46
CCGTCTT	3530	0.0	52.456966	47
ACGATCT	3465	0.0	52.32405	34
GACGATC	3545	0.0	52.031837	33