SRR1780856_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780856_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	281742
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	20693	7.344662847569762	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCG	2842	1.008724293857501	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	2087	0.7407486281775525	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	744	0.2640713844581212	No Hit
CTAATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	720	0.2555529527014077	No Hit
CATATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	640	0.22715818017902903	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	598	0.21225092460478026	No Hit
ATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGTCTT	415	0.14729788245983916	Illumina PCR Primer Index 4 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCCGT	30	1.02136255E-7	70.00124	44
GGAACTT	15	0.0022245653	69.988815	59
CGAATGC	60	0.0	64.15642	41
AGGGGGG	2985	0.0	62.625294	70
CGTATGA	95	0.0	58.93795	41
AACTCGT	60	1.8189894E-12	58.33437	37
CGTCTTA	25	2.383532E-4	56.02088	48
CGTCTAC	25	2.383532E-4	56.02088	48
TGACGTC	100	0.0	56.01094	45
AAACTCG	70	0.0	55.00098	36
TGCCGAC	45	2.6897396E-8	54.455082	45
GCCGTCT	3695	0.0	53.339237	46
CCGTCTT	3670	0.0	53.321037	47
CGTCTTC	3745	0.0	53.10391	48
AATCTCG	3715	0.0	53.042664	36
GTCTTCT	3730	0.0	52.84812	49
TCTTCTG	3735	0.0	52.777374	50
ATCTCGT	3700	0.0	52.595528	37
CTTGAAA	3830	0.0	52.5373	57
CTGGTAA	20	0.006941253	52.510254	53