SRR1780855_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780855_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	341811
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	17013	4.977312023311128	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCG	2257	0.6603064266509855	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCC	1804	0.5277770463794319	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	689	0.20157338412163447	No Hit
CTAATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	650	0.19016356992607025	No Hit
CATATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGT	592	0.17319512830189782	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	481	0.14072104174529199	No Hit
ATACACATCTCCGAGCCCACGAGACGCTTGCCAATCTCGTATGCCGTCTT	342	0.10005529371494774	RNA PCR Primer, Index 15 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGTAGT	30	1.0185795E-7	70.035286	1
GCCGACT	45	5.456968E-12	70.00454	46
CCGACTT	35	3.7016434E-9	70.00454	47
CTTTATA	35	3.7016434E-9	70.00454	2
AACTCGT	40	1.3460522E-10	70.00453	37
ATCTGCA	15	0.002224282	69.9943	29
AGACGAT	20	7.929605E-5	69.984055	25
AAACTCG	50	1.4551915E-11	63.004086	36
CGACTTC	45	3.8380676E-10	62.217148	48
AGGGGGG	2675	0.0	60.97591	70
GGGTCTA	35	2.9594048E-7	60.03024	1
GACAATA	30	8.3425875E-6	58.362736	1
TGCCGAC	60	1.8189894E-12	58.328583	45
GAATTAC	25	2.3827112E-4	56.028225	1
TATGCCG	3280	0.0	53.34931	43
CGTATGC	3320	0.0	53.34683	41
TCGTATG	3355	0.0	53.207623	40
CGTCTTC	3180	0.0	53.15604	48
GCCGTCT	3210	0.0	53.103134	46
CCGTCTT	3160	0.0	53.057236	47