SRR1780854_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780854_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	259223
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	18071	6.971217831751041	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCG	2422	0.9343306728183842	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	1811	0.6986262793039197	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	715	0.27582429028288385	No Hit
CTAATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	640	0.24689167242104287	No Hit
CATATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	593	0.22876056522762256	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	467	0.18015376721972973	No Hit
ATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGTCTT	439	0.16935225655130912	TruSeq Adapter, Index 8 (95% over 21bp)
TCTTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	338	0.13038966449736328	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGAATC	25	2.8356208E-6	69.99653	33
ACGAGTG	15	0.0022233932	69.99652	38
AGGGGGG	2300	0.0	64.68318	70
CGTCTTA	60	0.0	64.16348	48
TTACGAA	30	8.36433E-6	58.330437	31
TTTCGCA	50	9.786163E-10	55.997223	31
ATTACGA	25	2.3881572E-4	55.997223	30
CGTCTAC	25	2.3881572E-4	55.997223	48
AAACTCG	45	2.6937414E-8	54.441746	36
CAGCTTG	110	0.0	54.09866	54
GGAATAT	20	0.006942057	52.507526	1
TCAATGT	20	0.0069473563	52.4974	33
TTGGGAA	20	0.0069473563	52.4974	45
TTCGCAT	55	2.2755557E-9	50.906563	32
CGTATGC	3315	0.0	50.781796	41
ATCTCGT	3305	0.0	50.617764	37
GCCGTCT	3110	0.0	50.528038	46
TATGCCG	3270	0.0	50.517372	43
CCGTCTT	3090	0.0	50.40203	47
CTCGTAT	3350	0.0	50.25124	39