SRR1780853_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780853_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	413072
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	17190	4.161502111012124	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCG	2374	0.574718208932099	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCC	2179	0.527510942402293	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	675	0.16340976875702057	No Hit
CTTATACACATCTCCGAGCCCACGAGACCTGCCCGAATCTCGTATGCCGT	645	0.15614711236781967	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	617	0.14936863307123213	No Hit
CATATACACATCTCCGAGCCCACGAGACCTGACCGAATCTCGTATGCCGT	576	0.13944300267265755	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	465	0.11257117403261417	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGACT	55	0.0	63.633175	46
TGCCGAC	50	1.4551915E-11	62.99684	45
AGGGGGG	2690	0.0	61.416996	70
CCGACTT	65	0.0	59.2278	47
CGACTTC	60	1.8189894E-12	58.330406	48
GCCGTAT	50	9.804353E-10	55.997192	46
CGTCTTA	130	0.0	53.843452	48
TCGTCTC	20	0.006950278	52.497368	28
TTGCGGC	20	0.006950278	52.497368	34
TCCGTTT	20	0.006950278	52.497368	49
ATGACGA	20	0.006950278	52.497368	44
CGTATGC	3575	0.0	51.88551	41
CCGTCTT	3255	0.0	51.825356	47
TATGCCG	3530	0.0	51.75378	43
ATCTCGT	3605	0.0	51.647896	37
TCGTATG	3650	0.0	51.586456	40
AATCTCG	3590	0.0	51.57123	36
TCTCGTA	3635	0.0	51.510483	38
CTCGTAT	3625	0.0	51.459488	39
CGTCTTC	3215	0.0	51.381557	48