SRR1780852_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780852_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	261908
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	18171	6.937932403744826	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	2420	0.9239885761412405	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	1570	0.5994471341081601	No Hit
CATATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	709	0.27070574400171055	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	656	0.25046963055729493	No Hit
CTAATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	641	0.2447424286390641	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	423	0.16150709409410938	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	366	0.13974372680483224	RNA PCR Primer, Index 16 (95% over 23bp)
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	308	0.11759854605433968	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGACAT	20	7.914318E-5	70.00516	47
CGACTTA	15	0.002222332	70.00515	48
ACGCCGT	20	7.921809E-5	69.99179	28
GGTTGGA	20	7.921809E-5	69.99179	1
AGGGGGG	2785	0.0	62.338524	70
CGTCTTA	45	3.8380676E-10	62.226807	48
CGTGAAT	75	0.0	60.65955	32
TGACGTC	70	0.0	60.00442	45
AATCTCG	65	0.0	59.22382	36
TGACGAC	30	8.35846E-6	58.337627	45
CGACGTG	55	3.6379788E-11	57.266006	29
CGTATGA	100	0.0	55.99343	41
AACGCCG	25	2.3890022E-4	55.99343	27
CCGCCGA	75	0.0	55.99343	28
GTGCAAC	70	0.0	54.99355	33
CAACTCG	70	0.0	54.99355	36
AGCCGTG	110	0.0	54.084564	29
TCGTATG	3585	0.0	53.20157	40
TATGCCG	3500	0.0	53.19376	43
CGTATGC	3535	0.0	53.16208	41