SRR1780851_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780851_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	382038
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	21483	5.623262607384605	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCG	3129	0.8190284736073374	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCC	1710	0.44759945345750946	No Hit
CTTAAACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	800	0.2094032530795366	No Hit
CTAATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	714	0.1868924033734864	No Hit
CATATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	665	0.1740664541223648	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	579	0.1515556044163146	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGCGAC	15	0.0022247045	69.99254	37
AGGGGGG	2845	0.0	62.390434	70
CAACTCG	35	2.9728653E-7	59.993607	36
AACTCGT	30	8.37472E-6	58.327114	37
AGCCGTC	50	9.786163E-10	56.001366	45
CTTTATA	25	2.390268E-4	55.994034	2
CGAATGC	115	0.0	54.783943	41
CCGTCTT	3585	0.0	52.91621	47
TCTTCTG	3635	0.0	52.676678	50
CGTCTTC	3695	0.0	52.673943	48
GCCGTCT	3650	0.0	52.64512	46
GACGACA	80	0.0	52.501278	26
CGCATAG	20	0.0069514313	52.494404	5
ATCCGAC	20	0.0069514313	52.494404	3
TATGCCG	3695	0.0	52.477596	43
CGTATGC	3770	0.0	52.45486	41
ATCTCGT	3805	0.0	52.425423	37
TCGTATG	3885	0.0	52.343613	40
TCTCGTA	3835	0.0	52.295925	38
CATCTCG	3865	0.0	52.245403	36