SRR1780850_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780850_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	361922
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	21811	6.0264366355181505	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	3282	0.9068252275352148	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	1697	0.4688855609772271	No Hit
CTTAAACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	819	0.22629185294068885	No Hit
CTAATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	789	0.21800277407839258	No Hit
CATATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	752	0.2077795768148938	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	656	0.18125452445554566	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	429	0.11853382773083702	RNA PCR Primer, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACTTC	50	0.0	70.001656	48
TAAATCG	15	0.00222346	70.001656	36
TGACGTC	100	0.0	66.50157	45
ATCGTAT	80	0.0	65.62656	39
AGGGGGG	3025	0.0	61.89374	70
CGTATGA	120	0.0	61.251453	41
CAAATGT	35	2.969755E-7	60.00142	28
CGTCTTA	30	8.367364E-6	58.334717	48
GCCGACT	55	3.6379788E-11	57.274082	46
CAGCATG	25	2.3885616E-4	56.001324	54
CTTTATA	65	3.6379788E-12	53.839993	2
CGTCTTC	3675	0.0	53.62032	48
TCGTATG	3880	0.0	53.493538	40
TCTTCTG	3725	0.0	53.464355	50
ATCTCGT	3795	0.0	53.40047	37
CTCGTAT	3800	0.0	53.330208	39
CCGTCTT	3610	0.0	53.325363	47
GCCGTCT	3650	0.0	53.220436	46
TCTCGTA	3815	0.0	53.21227	38
CTTGAAA	3850	0.0	53.183083	57