SRR1780849_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780849_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	186823
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	15818	8.466837594942806	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCG	2246	1.2022074369858102	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	1423	0.7616835186245805	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	644	0.3447113042826633	No Hit
CATATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	618	0.3307943882712514	No Hit
CTAATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGT	507	0.2713798622225315	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	474	0.2537160842080472	No Hit
ATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCCGTCTT	351	0.18787836615406026	RNA PCR Primer, Index 31 (95% over 21bp)
CTTATACACATCTCCGAGCCCACGAGACACCGAGATATCTCGTATGCCGT	343	0.1835962381505489	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCCCGAGATATCTCGTATGCC	212	0.11347639209305063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCTCG	40	1.3460522E-10	70.0091	36
TCGTAAT	15	0.0022208341	70.0091	54
GCCGTAT	30	1.0205622E-7	69.990364	46
AGGGGGG	2160	0.0	62.24698	70
TGCCGTA	35	2.9652256E-7	59.991745	45
GCCGTCA	145	0.0	55.509598	46
ACGTATG	45	2.6844646E-8	54.451523	40
CACGTAT	45	2.6844646E-8	54.451523	39
TGACGTC	65	3.6379788E-12	53.83874	45
ATGCCGT	2860	0.0	53.104572	44
TGCCGTC	2855	0.0	52.829853	45
CGTCTTC	2745	0.0	52.77962	48
CTCGTAT	2860	0.0	52.751614	39
CGTATGC	2880	0.0	52.749912	41
CCGTCTT	2760	0.0	52.746365	47
TCGTATG	2895	0.0	52.718426	40
TATGCCG	2885	0.0	52.644398	43
TCTCGTA	2870	0.0	52.567814	38
GCCGTCT	2805	0.0	52.52396	46
TACCTGG	20	0.006932052	52.52089	7