SRR1780848_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780848_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	634393
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	19168	3.0214709178695225	RNA PCR Primer, Index 14 (95% over 23bp)
TCTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCG	2517	0.39675721516473234	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCC	2267	0.35734946634026543	RNA PCR Primer, Index 14 (95% over 21bp)
CTTAAACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	710	0.11191800666148585	RNA PCR Primer, Index 14 (95% over 23bp)
CTAATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	658	0.10372119490599674	No Hit
CATATACACATCTCCGAGCCCACGAGACACAGTTGCATCTCGTATGCCGT	635	0.10009568201414581	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCCGA	15	0.0022201943	70.03375	1
GCCGTAA	35	2.9736475E-7	60.00054	46
CGTCTAC	30	8.37142E-6	58.33846	48
TGCCGTA	60	1.8189894E-12	58.33386	45
AGGGGGG	2930	0.0	57.944813	70
CGTCTTA	80	0.0	56.879993	48
ATATCGT	110	0.0	54.08713	37
ATCGTAT	130	0.0	53.842396	39
CCGTCTT	3350	0.0	53.075104	47
GCCGTCT	3375	0.0	52.993073	46
TATGCCG	3545	0.0	52.81719	43
CGTCTTC	3365	0.0	52.634636	48
GACGTAT	20	0.0069503607	52.500473	46
TGACGTA	20	0.0069503607	52.500473	45
ATGCCGT	3560	0.0	52.402157	44
CGTATGC	3630	0.0	52.255306	41
TCGTATG	3675	0.0	52.186832	40
TGCCGTC	3515	0.0	52.176857	45
TCTCGTA	3600	0.0	52.107475	38
ATCTCGT	3605	0.0	52.035202	37