SRR1780847_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780847_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	306057
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	20924	6.836635005897594	No Hit
TCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCG	2774	0.9063671146224396	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	2528	0.8259899299803631	No Hit
CTTAAACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	856	0.2796864636325913	No Hit
CTAATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	751	0.24537912872438797	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	672	0.21956694341250158	No Hit
CATATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGT	654	0.2136856859996667	No Hit
ATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCCGTCTT	543	0.17741793195385172	RNA PCR Primer, Index 38 (95% over 22bp)
TCTTTATACACATCTCCGAGCCCACGAGACATTTATCTATCTCGTATGCC	346	0.1130508369356035	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2765	0.0	63.67876	70
CGAATGC	50	9.786163E-10	55.997776	41
TATGCCG	3645	0.0	52.617943	43
CGTATGT	20	0.00694379	52.506496	28
CGTCTTA	40	7.4682066E-7	52.497917	48
CGTCTAC	40	7.4682066E-7	52.497917	48
CGTATGC	3730	0.0	52.35717	41
TCGTATG	3840	0.0	52.31563	40
GCCGTCT	3620	0.0	52.304554	46
CCGTCTT	3580	0.0	52.302395	47
GTATGCC	3675	0.0	52.283638	42
CTCGTAT	3800	0.0	52.22161	39
TCTTCTG	3680	0.0	52.212605	50
CGTCTTC	3680	0.0	52.212605	48
TCTCGTA	3790	0.0	52.08237	38
ATCTCGT	3785	0.0	52.058697	37
CTTGAAA	3800	0.0	51.853207	57
TGCCGTC	3695	0.0	51.716484	45
GTCTTCT	3710	0.0	51.69606	49
ATGCCGT	3700	0.0	51.6466	44