SRR1780845_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780845_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	380476
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	10543	2.771002638799819	No Hit
ATTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCGT	3228	0.8484109378778162	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2137	0.5616648619098182	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCCG	1915	0.5033168977806747	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACGTGACGATCTCGTATGCC	1057	0.2778099012815526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTGA	15	0.002225878	69.98318	28
GCCGTCA	50	1.4551915E-11	63.001423	46
ATATCGT	100	0.0	59.501343	37
AGGGGGG	2065	0.0	58.159836	70
CGTCTAC	25	2.3856286E-4	56.01599	48
ACGTATG	25	2.3902829E-4	55.9939	40
GACACGA	75	0.0	55.986546	26
ACGATAT	95	0.0	55.25714	34
CCGTCTT	2435	0.0	53.75891	47
CGTCTTC	2465	0.0	53.686726	48
GCCGTCT	2475	0.0	53.597168	46
TATGCCG	2500	0.0	53.467148	43
CGTATGC	2550	0.0	53.249104	41
ATCGTAT	125	0.0	53.2012	39
ATCTCGT	2390	0.0	53.013744	37
TCGTATG	2595	0.0	53.00001	40
ATGCCGT	2530	0.0	52.985386	44
TGCCGTC	2545	0.0	52.94815	45
GATCTCG	2425	0.0	52.82593	36
TCTTCTG	2490	0.0	52.72589	50