SRR1780844_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780844_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	282664
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	7599	2.688350833498429	No Hit
ATTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGT	5302	1.8757252426909687	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2655	0.9392777290351796	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCG	1676	0.5929301219822829	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	537	0.1899782073415787	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCC	409	0.14469476127133274	No Hit
ATACACATCTCCGAGCCCACGAGACTTCTACCAATCTCGTATGCCGTCTT	390	0.13797299974528063	Illumina PCR Primer Index 4 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTCTTA	55	0.0	70.00938	48
TCCGCGA	15	0.002223543	69.996994	63
CGGATTT	15	0.002223543	69.996994	34
TATTACG	15	0.002223543	69.996994	25
AGGGGGG	1670	0.0	60.367367	70
TAAAGCG	25	2.3884502E-4	55.99759	58
GCCGAAA	25	2.3884502E-4	55.99759	46
GCATGTT	25	2.3884502E-4	55.99759	19
GTAAAAC	25	2.3884502E-4	55.99759	35
ATTATAC	1115	0.0	54.017384	1
AATCTCG	2325	0.0	52.68591	36
CTCGTAT	2365	0.0	52.534744	39
ATCTCGT	2320	0.0	52.497746	37
ATTACGG	20	0.0069478224	52.497746	26
TACAGCC	20	0.0069478224	52.497746	4
TGCCGAC	60	8.367351E-11	52.497746	45
TATGCCG	2335	0.0	52.460274	43
TCTCGTA	2390	0.0	52.424526	38
CGTATGC	2395	0.0	52.315075	41
TCGTATG	2445	0.0	52.247246	40