SRR1780842_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780842_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	233362
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	11392	4.881685964295815	No Hit
ATTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGT	5854	2.5085489497004656	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3441	1.4745331287870347	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCG	2216	0.9495976208637226	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	958	0.41052099313512913	No Hit
ATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCCGTCTT	522	0.22368680419262774	TruSeq Adapter, Index 8 (95% over 21bp)
ATCTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	475	0.20354642143965168	No Hit
CTTATACACATCTCCGCGCCCACGAGACCATTTCGAATCTCGTATGCCGT	332	0.14226823561676707	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCATTTCGAATCTCGTATGCC	250	0.10712969549455352	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCACA	15	0.002220922	70.01393	35
TTTCGAG	25	2.8377654E-6	69.98393	31
GAAGGTC	15	0.0022247017	69.98393	14
GCCGTAT	45	3.8380676E-10	62.207935	46
CGTATGA	125	0.0	61.61226	41
CGTCTAC	40	1.0604708E-8	61.26219	48
AGGGGGG	1900	0.0	60.669342	70
ATTATAC	990	0.0	57.63773	1
AGTCTCG	25	2.3847283E-4	56.011147	36
CCCGCTA	25	2.389786E-4	55.987144	14
TGCCGTA	50	9.786163E-10	55.987144	45
TGACGTC	115	0.0	54.770035	45
ATATCGA	110	0.0	54.07849	30
ATATCGT	105	0.0	53.343952	37
CAGCTTG	160	0.0	52.521713	54
ATCGTAT	120	0.0	52.510452	39
TGTCGGA	20	0.006939662	52.510452	35
GGGCTTA	20	0.006945548	52.4992	6
AGACCTT	20	0.006945548	52.4992	25
CTCAGTC	20	0.006945548	52.4992	7