SRR1780841_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780841_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47645
Sequences flagged as poor quality	0
Sequence length	76
%GC	81

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	26197	54.98373386504355	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTG	1642	3.4463217546437193	No Hit
TCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGT	200	0.419771224682548	No Hit
CTCTTATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGG	133	0.27914786441389444	No Hit
ATACACATCTGACGCTGCCGACGAGCGATCTAGTGTAGATCTCGGTGGTC	123	0.25815930317976704	No Hit
GGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	56	0.11753594291111344	No Hit
GGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52	0.10914051841746249	No Hit
GGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	52	0.10914051841746249	No Hit
GGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	51	0.10704166229404974	No Hit
CTTATACACATCTGACGCTGCCGACGAGCGATCAAGTGTAGATCTCGGTG	51	0.10704166229404974	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGCTAAA	15	0.0022092734	70.01998	41
ACTGCCC	15	0.0022185154	69.94643	12
GCTGGCG	15	0.0022185154	69.94643	17
GCTAAAT	20	0.0069035324	52.514984	42
AAAGGGG	30	5.8142305E-4	46.679985	69
TGGTCGC	215	0.0	45.594406	49
GTGGTCG	215	0.0	45.594406	48
GTAGATC	240	0.0	45.221237	38
TCGGTGG	240	0.0	45.221237	45
GATCTCG	240	0.0	45.221237	41
AGATCTC	240	0.0	45.221237	40
TAGATCT	240	0.0	45.221237	39
TCTCGGT	225	0.0	45.12399	43
CGGTGGT	235	0.0	44.693604	46
TGTAGAT	235	0.0	44.693604	37
CTCGGTG	235	0.0	44.693604	44
ATCTAGT	235	0.0	44.64666	31
GGTCGCC	205	0.0	44.402916	50
ATCTCGG	245	0.0	44.29835	42
GTGTAGA	245	0.0	44.251823	36