SRR1780840_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780840_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	255255
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	11315	4.4328220798809035	No Hit
ATTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	3467	1.358249593543711	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	2070	0.8109537521302227	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCG	2065	0.8089949266419854	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCC	833	0.32634032634032634	No Hit
CTTATACACATCTCCGCGCCCACGAGACCGCCGTGCATCTCGTATGCCGT	427	0.1672836966954614	No Hit
ATACACATCTCCGAGCCCACGAGACCGCCGTGCATCTCGTATGCCGTCTT	381	0.14926250220367868	RNA PCR Primer, Index 16 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGATCGA	15	0.0022229415	69.9998	25
AATCTCG	45	3.8380676E-10	62.222046	36
AGGGGGG	2050	0.0	61.975437	70
ATCGTAT	35	2.96679E-7	59.999832	39
GCCGTCA	195	0.0	59.230606	46
TGCCGTA	30	8.361647E-6	58.333168	45
GACACCT	25	2.3875356E-4	55.999847	16
GCCGTAT	25	2.3875356E-4	55.999847	46
ATCTCGT	2615	0.0	55.41093	37
CGTATGC	2575	0.0	55.18431	41
TCTCGTA	2635	0.0	55.123184	38
CATCTCG	2650	0.0	55.075317	36
CGAATGC	70	0.0	54.999847	41
TATGCCG	2530	0.0	54.78245	43
TCGTATG	2650	0.0	54.679092	40
ATGCCGT	2555	0.0	54.657383	44
CTCGTAT	2620	0.0	54.63725	39
GTGCATC	2685	0.0	54.618095	33
TGCCGTC	2545	0.0	54.45957	45
GCATCTC	2680	0.0	54.458805	35