SRR1780839_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780839_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	283044
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	8764	3.096338378485324	No Hit
ATTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGT	4829	1.7060951654159777	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3058	1.080397394044742	No Hit
TCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCG	1749	0.6179251282486116	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCC	879	0.3105524229448425	No Hit
ATCTTATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCC	439	0.15509956049236162	No Hit
ATACACATCTCCGAGCCCACGAGACGCCAATTCATCTCGTATGCCGTCTT	430	0.15191984285128815	RNA PCR Primer, Index 45 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGCACGC	15	0.002221075	70.01662	26
CACGAAT	15	0.0022226325	70.00424	39
GACCGTG	15	0.002224191	69.99187	7
GCCGTAT	20	7.922866E-5	69.99187	46
TGCCGTA	30	1.0223266E-7	69.99187	45
AGGGGGG	1680	0.0	61.253708	70
CGTATGA	70	0.0	60.003635	41
CGAATGC	55	3.6379788E-11	57.276203	41
CGTCTTC	2180	0.0	54.580822	48
CGTCTTA	45	2.696288E-8	54.438126	48
CCGTCTT	2190	0.0	54.17179	47
GTATGCC	2300	0.0	54.16762	42
GCCGTCT	2250	0.0	54.12705	46
CTCGTAT	2400	0.0	53.961605	39
TATGCCG	2320	0.0	53.851505	43
TCGTATG	2425	0.0	53.838314	40
ATGCCGT	2325	0.0	53.585175	44
CGTATGC	2380	0.0	53.238518	41
TGCCGTC	2310	0.0	53.17564	45
ATCTCGT	2400	0.0	53.08655	37