SRR1780838_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780838_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	190681
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	12652	6.6351655382549914	No Hit
ATTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGT	5483	2.875483136757202	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3369	1.7668252211809252	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCG	2326	1.2198383687939542	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	934	0.48982331747788194	No Hit
ATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCCGTCTT	679	0.3560921119566186	RNA PCR Primer, Index 15 (95% over 23bp)
ATCTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	380	0.1992857180316864	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACTAATGTCTATCTCGTATGCC	359	0.18827255992993536	No Hit
CTTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	310	0.16257519102584947	No Hit
ATTATACACATCTCCGCGCCCACGAGACTAATGTCTATCTCGTATGCCGT	197	0.10331391171642691	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGACGAC	15	0.0022227443	69.99449	45
AGGGGGG	2245	0.0	63.931557	70
ATTATAC	1030	0.0	60.156677	1
AGCCGTC	35	2.9643343E-7	59.995277	45
GCCGTCA	105	0.0	56.662205	46
TCTGCCG	25	2.3868914E-4	55.995594	43
TGTCAAT	70	0.0	54.99567	32
CGTATGA	115	0.0	54.778294	41
CGTCTTC	3090	0.0	53.812466	48
GCCGTCT	3040	0.0	53.76222	46
CCGTCTT	3015	0.0	53.511543	47
CTTGAAA	3170	0.0	53.43428	57
TTGAAAA	3235	0.0	53.334293	58
GTCTTCT	3070	0.0	53.250816	49
TGCCGTC	3145	0.0	53.19136	45
ATGCCGT	3155	0.0	53.02277	44
CTGCTTG	3040	0.0	52.97025	54
TATGCCG	3115	0.0	52.917187	43
TCTTCTG	3100	0.0	52.848415	50
GTATGCC	3130	0.0	52.775402	42