SRR1780833_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780833_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	412762
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	36621	8.872183001342178	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	5517	1.336605598383572	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4304	1.0427316468085726	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	2082	0.5044068979218048	No Hit
ATTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	1998	0.48405618734282707	No Hit
CTAATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	1642	0.39780793774620726	No Hit
CTTATACACATCTCCGCGCCCACGAGACCTCATGGGATCTCGTATGCCGT	974	0.23597133457052732	No Hit
CTTAAACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	669	0.16207887353971537	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCC	630	0.15263032934233287	No Hit
CATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGT	553	0.1339755113116033	No Hit
TCATATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCG	543	0.1315528076712488	No Hit
ATACACATCTCCGAGCCCACGAGACCTCATGGGATCTCGTATGCCGTCTT	451	0.10926393417998749	RNA PCR Primer, Index 34 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGTCTT	15	0.002224533	69.9949	47
GTATCCC	15	0.002225602	69.986435	42
TCGAAAG	20	7.930216E-5	69.986435	40
CTTAAGC	60	0.0	64.185326	51
AGGGGGG	4610	0.0	63.929348	70
TAAGACG	45	3.8562575E-10	62.210155	43
ATCGTAA	40	1.065564E-8	61.24555	39
AACTCGT	75	0.0	60.66226	37
GACGACT	35	2.9727562E-7	59.99564	46
AAGCCGT	185	0.0	58.644382	44
GACGTAT	30	8.374227E-6	58.329086	46
CGTCTTA	175	0.0	56.002712	48
CGACTTA	25	2.3886639E-4	56.002712	48
TGCCGAC	150	0.0	55.99593	45
GGATATC	260	0.0	55.188297	35
ATATCGT	260	0.0	55.188297	37
CCGTCTT	6010	0.0	54.330494	47
GCCGTCT	6090	0.0	54.19146	46
CGTCTTC	5980	0.0	54.141426	48
TATGCCG	6490	0.0	54.0265	43