SRR1780832_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780832_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	379092
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	31925	8.421438595380542	No Hit
TCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	4830	1.274097052958121	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	4143	1.0928745528789845	No Hit
ATTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	2213	0.5837633081151805	No Hit
CTAATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	1702	0.44896753294714736	No Hit
CTCTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	1576	0.4157302185221529	No Hit
TCTTTATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCC	637	0.16803308959302757	No Hit
CTTAAACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	628	0.16565899570552794	No Hit
TCATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCG	556	0.1466662446055311	No Hit
CATATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGT	498	0.1313665284416448	No Hit
CTTATACACATCTCCGCGCCCACGAGACACCGGCTAATCTCGTATGCCGT	443	0.11685817690692496	No Hit
ATACACATCTCCGAGCCCACGAGACACCGGCTAATCTCGTATGCCGTCTT	421	0.11105483629303704	TruSeq Adapter, Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACACGT	15	0.002221972	70.01412	37
GGTCCCA	15	0.0022231352	70.00488	1
GCACTAG	15	0.0022231352	70.00488	1
TAAGACG	20	7.929393E-5	69.98641	43
AGGGGGG	4515	0.0	65.27587	70
AAGCCGT	70	0.0	64.99596	44
TAACGTA	35	2.9664807E-7	60.012104	38
CTCTCGT	85	0.0	57.658688	37
TCTCGTA	5815	0.0	57.010635	38
CCGTCTT	5550	0.0	57.005466	47
CGTCTTC	5625	0.0	56.992012	48
AATCTCG	5745	0.0	56.913136	36
GCCGTCT	5665	0.0	56.898487	46
AGCCGTC	80	0.0	56.871464	45
ATCTCGT	5755	0.0	56.753403	37
CTCGTAT	5780	0.0	56.689632	39
TATGCCG	5760	0.0	56.62095	43
TCGTATG	5935	0.0	56.558285	40
TCTTCTG	5655	0.0	56.504	50
CGTATGA	155	0.0	56.455547	41