SRR1780831_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780831_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1726383
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	29189	1.6907603932615183	No Hit
TCTTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCG	4111	0.23812792410490605	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3412	0.19763864681243964	No Hit
ATTATACACATCTCCGAGCCCACGAGACCGGTTCCCATCTCGTATGCCGT	1929	0.1117365034294244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5065	54.653027	43
AGGGGGG	4370	54.631855	70
CGTATGC	5200	54.37982	41
CCGTCTT	4795	54.374767	47
GCCGTCT	4850	54.335415	46
CGTCTTC	4830	54.135075	48
TCGTATG	5265	54.04082	40
CTCGTAT	5195	53.692684	39
TGCCGTC	5085	53.131992	45
ATCTCGT	5225	53.116474	37
TCTCGTA	5240	53.098003	38
ATGCCGT	5180	52.90074	44
GTATGCC	5305	52.246475	42
CATCTCG	5345	51.203705	36
CTTGAAA	5490	50.236732	57
GTCTTCT	5185	49.956062	49
CTGCTTG	5415	47.96904	54
TCTTCTG	5415	47.7063	50
TTGAAAA	5950	47.1135	58
CTTCTGC	5545	46.591896	51