SRR1780830_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR1780830_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	585186
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCGT	9949	1.70014320233225	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	3778	0.6456066959906765	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTAGTATGCCGT	2509	0.428752567559716	No Hit
TCTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATGCCG	1137	0.19429719781402835	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCTCGTATTCCGT	677	0.1156897123307803	No Hit
CTTATACACATCTCCGAGCCCACGAGACTTCGCGGCATCGCGTATGCCGT	622	0.10629099124039194	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGGGGGG	2310	0.0	62.593792	70
TTCCGTA	150	0.0	60.658222	45
TTCCGTC	175	0.0	57.991932	45
CTCGTAT	2030	0.0	57.932877	39
TCGTATG	1790	0.0	57.878933	40
ATCTCGT	2210	0.0	57.332134	37
TCTCGTA	2135	0.0	56.88705	38
CCGTCTT	1010	0.0	56.823772	47
ATTCCGT	315	0.0	56.65878	44
CATCTCG	2475	0.0	56.00178	36
TCCGAAA	25	2.391708E-4	55.992207	46
GCCGTGT	25	2.391708E-4	55.992207	46
CGTATGC	1820	0.0	55.963318	41
TATGCCG	2455	0.0	55.87817	43
CGTCTTC	575	0.0	55.38833	48
GCCGTCA	740	0.0	55.33014	46
ATGCCGT	2310	0.0	55.14384	44
GTATGCC	2685	0.0	54.61065	42
TACGCGG	45	2.703564E-8	54.43687	29
GCATCTC	2635	0.0	53.929607	35